The Treenome Browser allows simultaneous exploration of a reference genome, phylogeny, and the genetic variation within a tree.
Enabling the Treenome Browser#
Currently, only jsonl trees that have been created with
usher_to_taxonium using a protobuf and an associated Genbank file work with the Treenome Browser. E.g.,
usher_to_taxonium -i input.pb -o output.jsonl.gz --genbank gbfile.gb
If your supplied tree file is supported, enable Treenome Browser in the right-hand panel.
Load annotations by clicking the track selector button in the browser panel.
If you are viewing the public SARS-CoV-2 tree (cov2tree.org), annotation tracks are loaded automatically from the UCSC Genome Browser. Otherwise, annotations are currently limited to a reference sequence track.